Provided your source is MP4 and you are converting to fragmented MP$, I came to a conclusion on the below post.
Stereo video HLS - https://developer.apple.com/forums/thread/743503?answerId=775862022#775862022
I arrived at a solution. I came to realized that fMP4 (fragmented MP4) in the error was in reference to the output format rather than the source format. mediafilesegmenter defaults to ts segmentation rather than fMP4. I added -iso-fragmented option to the command so it looked similar to the demo script below.
mediafilesegmenter -iso-fragmented -t 4 -b https://www.example.com/spatial_video_stream/ -f ~/path/to/dir/with/file spatial_video.mov
Topic:
Media Technologies
SubTopic:
Streaming
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