can I use the san francisco font in my company's logo?

If you open the Font Book app on your Mac and choose the font you want to use, you can see the license terms of the font:

As far as I read the license of SF Pro Rounded, I could not find any statements you could use it in your company's logo.

Instead, I could find this:

You agree that you shall not use or incorporate the Symbols or any substantially or confusingly similar images into app icons, logos or make any other trademark use of the Symbols. 

I'm not a legal expert, so you may contact to some legal or licensing expert and show all the terms in the license. But generally, you cannot use Apple's fonts other than using it in your apps.