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ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd' for architecture x86_64
I am trying to build AI-Feynman https://github.com/SJ001/AI-Feynman OS X 12.4 XCode 13.4 % xcode-select -p /Library/Developer/CommandLineTools % which gfortran /Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/gfortran (AI-Feynman) davidlaxer@x86_64-apple-darwin13 AI-Feynman % gfortran --version GNU Fortran (GCC) 4.8.5 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING I am getting this error trying in link AI-Feynman: /Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -arch x86_64 -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1module.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/fortranobject.o build/temp.macosx-10.9-x86_64-3.9/aifeynman/symbolic_regress1.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1-f2pywrappers.o -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -lgfortran -o aifeynman/_symbolic_regress1.cpython-39-darwin.so ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd' for architecture x86_64 collect2: error: ld returned 1 exit status error: Command "/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -arch x86_64 -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1module.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/fortranobject.o build/temp.macosx-10.9-x86_64-3.9/aifeynman/symbolic_regress1.o build/temp.macosx-10.9-x86_64-3.9/build/src.macosx-10.9-x86_64-3.9/aifeynman/_symbolic_regress1-f2pywrappers.o -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -L/Users/davidlaxer/anaconda3/envs/AI-Feynman/bin/../lib/gcc/x86_64-apple-darwin11.4.2/4.8.5/../../.. -lgfortran -o aifeynman/_symbolic_regress1.cpython-39-darwin.so" failed with exit status 1 % find /Applications/Xcode.app -name libSystem.tbd -ls 227714500 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/AppleTVOS.platform/Developer/SDKs/AppleTVOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227847317 64 -rw-r--r-- 1 root wheel 170869 Feb 21 20:37 /Applications/Xcode.app/Contents/Developer/Platforms/DriverKit.platform/Developer/SDKs/DriverKit.sdk/System/DriverKit/usr/lib/libSystem.tbd 228117342 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Developer/SDKs/iPhoneOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd find: /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Library/Developer/CoreSimulator/Profiles/Runtimes/iOS.simruntime/Contents/Resources/RuntimeRoot/private/var/mobile: Permission denied 227900857 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/WatchOS.platform/Developer/SDKs/WatchOS.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227872436 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 228110285 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/WatchSimulator.platform/Developer/SDKs/WatchSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 227845798 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/AppleTVSimulator.platform/Developer/SDKs/AppleTVSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd 228409847 0 lrwxr-xr-x 1 root wheel 15 Jul 29 2021 /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator.sdk/usr/lib/libSystem.tbd -> libSystem.B.tbd (AI-Feynman) davidlaxer@x86_64-apple-darwin13 AI-Feynman % diff /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd
1
0
1.8k
Jun ’22
Training Top2vec Model Crashed OS X 12.3.1
Training Top2vec with embedding_batch_size=256 crashed OS X 12.3.1 tensorflow_macos 2.8.0, tensorflow_metal 0.4.0 Anaconda Python 3.8.5 % pip show tensorflow_macos WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-macos Version: 2.8.0 Summary: TensorFlow is an open source machine learning framework for everyone. Home-page: https://www.tensorflow.org/ Author: Google Inc. Author-email: packages@tensorflow.org License: Apache 2.0 Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: absl-py, astunparse, flatbuffers, gast, google-pasta, grpcio, h5py, keras, keras-preprocessing, libclang, numpy, opt-einsum, protobuf, setuptools, six, tensorboard, termcolor, tf-estimator-nightly, typing-extensions, wrapt Required-by: (tensorflow-metal) (base) davidlaxer@x86_64-apple-darwin13 top2vec % pip show tensorflow_metal WARNING: Ignoring invalid distribution -umpy (/Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages) Name: tensorflow-metal Version: 0.4.0 Summary: TensorFlow acceleration for Mac GPUs. Home-page: https://developer.apple.com/metal/tensorflow-plugin/ Author: Author-email: License: MIT License. Copyright © 2020-2021 Apple Inc. All rights reserved. Location: /Users/davidlaxer/tensorflow-metal/lib/python3.8/site-packages Requires: six, wheel Required-by: To train the model with embedding_model="universal-sentence-encoder", you'll have to download universal-sentence-encoder_4. top2vec_trained = Top2Vec(documents=papers_filtered_df.text.tolist(), split_documents=True, **embedding_batch_size=256,** embedding_model="universal-sentence-encoder", use_embedding_model_tokenizer=True, embedding_model_path="/Users/davidlaxer/Downloads/universal-sentence-encoder_4", workers=8) Here's the project: https://github.com/ddangelov/Top2Vec Here's the Jupyter notebook: https://github.com/ddangelov/Top2Vec/blob/master/notebooks/CORD-19_top2vec.ipynb You'll have to load the COVID-19 data set from Kaggle here: https://www.kaggle.com/datasets/allen-institute-for-ai/CORD-19-research-challenge I set filter size to 1,000: def filter_short(papers_df): papers_df["token_counts"] = papers_df["text"].str.split().map(len) papers_df = **papers_df[papers_df.token_counts>1000].reset_index(drop=True)** papers_df.drop('token_counts', axis=1, inplace=True) return papers_df Trace panic(cpu 8 caller 0xffffff8020d449ad): userspace watchdog timeout: no successful checkins from WindowServer in 120 seconds service: logd, total successful checkins since wake (127621 seconds ago): 12763, last successful checkin: 0 seconds ago service: WindowServer, total successful checkins since wake (127621 seconds ago): 12751, last successful checkin: 120 seconds ago service: remoted, total successful checkins since wake (127621 seconds ago): 12763, last successful checkin: 0 [Trace](https://developer.apple.com/forums/content/attachment/d17c2c9b-569b-4c1a-9c61-892ced7f785b)
2
0
1.6k
Jun ’22
Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY
[I am running Top2vec on Big Sur 11.6 with tensorflow-macos and tensorflow-metal. Python crashed ... linkText Crashed Thread: 0 Dispatch queue: metal gpu stream Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: /System/Volumes/Data/SWE/macOS/BuildRoots/38cf1d983f/Library/Caches/com.apple.xbs/Sources/MetalPerformanceShaders/MetalPerformanceShaders-124.6.1/MPSCore/Utility/MPSCommandBufferImageCache.mm:1386: failed assertion `Failed to allocate private MTLBuffer for size 421888000 Crash Log
3
0
2.6k
Sep ’22
[MPSGraph adamUpdateWithLearningRateTensor:beta1Tensor:beta2Tensor:epsilonTensor:beta1PowerTensor:beta2PowerTensor:valuesTensor:momentumTensor:velocityTensor:gradientTensor:name:]: unrecognized selector sent to instance 0x600000eede10
I am running tensorflow-macos and tensorflow-metal version 2.6 on Monterey Beta (21A5543b) on an iMac 27" 2021 with an AMD Radeon GPU. I got the following error training the model VariationalDeepSemanticHashing e.g. 2021-10-09 13:05:14.521286: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-10-09 13:05:27.092823: I tensorflow/core/grappler/optimizers/custom_graph_optimizer_registry.cc:112] Plugin optimizer for device_type GPU is enabled. 2021-10-09 13:05:27.153 python[6315:1459657] -[MPSGraph adamUpdateWithLearningRateTensor:beta1Tensor:beta2Tensor:epsilonTensor:beta1PowerTensor:beta2PowerTensor:valuesTensor:momentumTensor:velocityTensor:gradientTensor:name:]: unrecognized selector sent to instance 0x600000eede10 [I 2021-10-09 13:05:28.157 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (1/5), keep random ports kernel d25e6066-74f7-4b4a-b5e7-b2911e7501d9 restarted https://github.com/unsuthee/VariationalDeepSemanticHashing/blob/master/Run_Experiment_Unsupervised.ipynb Here's the repository: https://github.com/unsuthee/VariationalDeepSemanticHashing
22
0
8.5k
Jan ’23