FINALLY FOUND THE ANSWER!
Call Apple Support.
We can't fix it ourselves. They have to fix it manually over the phone. It took waiting on hold for 3 minutes but it's all sorted now.
Use the Apple Developer Contact page to get in touch with them.
Visit https://developer.apple.com/contact/topic/select and then select "Membership and Account" then "Program Purchase and Renewal" and then select a call back.
I hope this helps!
Topic:
Developer Tools & Services
SubTopic:
Apple Developer Program
Tags: